{ "_id": "6a103380acfb0bcc41c985cd", "Package": "rACMEMEEV", "Title": "Multi-Variate Measurement Error Adjustment", "Version": "1.0.1", "Authors@R": "person(\"Alexander\", \"Lee\", , \"westford14@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"))", "Description": "A methodology to perform multivariate measurement error\nadjustment using external validation data. Allows users to\nremove the attenuating effect of measurement error by\nincorporating a distribution of external validation data, and\nallows for plotting of all resultant adjustments. Sensitivity\nanalyses can also be run through this package to test how\ndifferent ranges of validity coefficients can impact the effect\nof the measurement error adjustment. The methods implemented in\nthis package are based on the work by Muoka, A., Agogo, G.,\nNgesa, O., Mwambi, H. (2020):\n.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "URL": "https://github.com/westford14/rACME-MEEV", "BugReports": "https://github.com/westford14/rACME-MEEV/issues", "Config/pak/sysreqs": "cmake make jags libicu-dev", "Repository": "https://westford14.r-universe.dev", "Date/Publication": "2026-01-12 10:34:17 UTC", "RemoteUrl": "https://github.com/westford14/racme-meev", "RemoteRef": "HEAD", "RemoteSha": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-12 08:17:56 UTC", "User": "root" }, "Author": "Alexander Lee [aut, cre, cph]", "Maintainer": "Alexander Lee ", "MD5sum": "e8fc8aee1e4683a598bcdad4f9aa88f1", "_user": "westford14", "_type": "src", "_file": "rACMEMEEV_1.0.1.tar.gz", "_fileid": "db60fc9e3729cea0458f20af44b3553cb696d6c7bfc6ee70fee197e6b6f047ff", "_filesize": 1472790, "_sha256": "db60fc9e3729cea0458f20af44b3553cb696d6c7bfc6ee70fee197e6b6f047ff", "_created": "2026-05-12T08:17:56.000Z", "_published": "2026-05-22T10:44:16.534Z", "_distro": "noble", "_jobs": [ { "job": 77363893900, "time": 275, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6939154255" }, { "job": 77363894121, "time": 279, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6939155447" }, { "job": 77363894038, "time": 264, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6939144635" }, { "job": 77363893908, "time": 298, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6939141679" }, { "job": 77363893296, "time": 323, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6939064519" }, { "job": 77363893397, "time": 162, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7158620231" }, { "job": 77363894218, "time": 280, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6939155959" }, { "job": 77363893898, "time": 200, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6939129614" }, { "job": 77363893725, "time": 240, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6939143004" } ], "_buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/westford14/racme-meev", "_commit": { "id": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "author": "Alex Lee ", "committer": "GitHub ", "message": "Merge pull request #28 from westford14/westford14/quick-fix\n\nupdating readme", "time": 1768214057 }, "_maintainer": { "name": "Alexander Lee", "email": "westford14@gmail.com", "login": "westford14", "uuid": 8027928 }, "_registered": true, "_dependencies": [ { "package": "rjags", "role": "Imports" }, { "package": "MCMCpack", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "rstan", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "ggpubr", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "bayesplot", "role": "Imports" }, { "package": "doSNOW", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "snow", "role": "Imports" }, { "package": "parallelly", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "BH", "role": "Suggests" }, { "package": "glmnet", "role": "Suggests" } ], "_owner": "westford14", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 3 }, { "week": "2025-34", "n": 3 }, { "week": "2025-35", "n": 2 }, { "week": "2025-36", "n": 2 }, { "week": "2025-38", "n": 1 }, { "week": "2025-39", "n": 5 }, { "week": "2025-43", "n": 2 }, { "week": "2025-44", "n": 2 }, { "week": "2025-45", "n": 1 }, { "week": "2025-46", "n": 1 }, { "week": "2025-48", "n": 4 }, { "week": "2025-50", "n": 1 }, { "week": "2026-03", "n": 1 } ], "_tags": [ { "name": "v1.0.1", "date": "2025-12-13" } ], "_stars": 0, "_contributors": [ { "user": "westford14", "count": 81, "uuid": 8027928 } ], "_userbio": { "uuid": 8027928, "type": "user", "name": "Alex Lee", "description": "https://westford14.github.io/" }, "_downloads": { "count": 188, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rACMEMEEV" }, "_devurl": "https://github.com/westford14/racme-meev", "_searchresults": 0, "_topics": [ "jags", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/rACMEMEEV.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/westford14/racme-meev", "_realowner": "westford14", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2025-12-12" }, { "version": "1.0.1", "date": "2025-12-13" } ], "_exports": [ "acf_plots", "acme_model", "attenuation_matrix", "create_model_string", "create_modelling_data", "create_stan_model_string", "fisher_z_transform", "generate_coefficient", "multivariate_model", "pipeline", "plot_covariates", "sensitivity_analysis", "standardize_with_return", "traceplots" ], "_help": [ { "page": "acf_plots", "title": "Create Auto Correlation Plots for Models", "topics": [ "acf_plots" ] }, { "page": "acme_model", "title": "Model the Data", "topics": [ "acme_model" ] }, { "page": "attenuation_matrix", "title": "Create Attenuation Contamination Matrix", "topics": [ "attenuation_matrix" ] }, { "page": "create_model_string", "title": "Define a Model that is JAGS Usable", "topics": [ "create_model_string" ] }, { "page": "create_modelling_data", "title": "Data Preparation and Formatting for Modelling", "topics": [ "create_modelling_data" ] }, { "page": "create_stan_model_string", "title": "Define the Pre-Model Using Stan", "topics": [ "create_stan_model_string" ] }, { "page": "fisher_z_transform", "title": "Perform the Fisher Z Transformation", "topics": [ "fisher_z_transform" ] }, { "page": "generate_coefficient", "title": "Generate updated validity coefficient using Fisher Z Transformation", "topics": [ "generate_coefficient" ] }, { "page": "multivariate_model", "title": "Model the Data with Multivariate Adjustment", "topics": [ "multivariate_model" ] }, { "page": "pipeline", "title": "Pipeline used for running a model start to finish.", "topics": [ "pipeline" ] }, { "page": "plot_a_list", "title": "Custom Function to Use Patchwork", "topics": [ "plot_a_list" ] }, { "page": "plot_covariates", "title": "Diagnostics for Models", "topics": [ "plot_covariates" ] }, { "page": "sensitivity_analysis", "title": "Run a sensitivity analysis on the error adjustment", "topics": [ "sensitivity_analysis" ] }, { "page": "standardize_with_return", "title": "Standardize the data of 1-D vector", "topics": [ "standardize_with_return" ] }, { "page": "traceplots", "title": "Create Traceplots for the Parameters", "topics": [ "traceplots" ] } ], "_readme": "https://github.com/westford14/racme-meev/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "bayesplot", "BH", "boot", "broom", "callr", "car", "carData", "checkmate", "cli", "coda", "codetools", "colorspace", "corrplot", "cowplot", "cpp11", "Deriv", "desc", "distributional", "doBy", "doSNOW", "dplyr", "farver", "foreach", "forecast", "Formula", "fracdiff", "generics", "ggplot2", "ggpubr", "ggrepel", "ggridges", "ggsci", "ggsignif", "glue", "gridExtra", "gtable", "inline", "isoband", "iterators", "labeling", "lattice", "lifecycle", "lme4", "lmtest", "loo", "magrittr", "MASS", "Matrix", "MatrixModels", "matrixStats", "mcmc", "MCMCpack", "mgcv", "microbenchmark", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "parallelly", "patchwork", "pbkrtest", "pillar", "pkgbuild", "pkgconfig", "plyr", "polynom", "posterior", "processx", "ps", "purrr", "quantreg", "QuickJSR", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "Rdpack", "reformulas", "reshape2", "rjags", "rlang", "rstan", "rstatix", "S7", "scales", "snow", "SparseM", "StanHeaders", "stringi", "stringr", "survival", "tensorA", "tibble", "tidyr", "tidyselect", "timeDate", "urca", "utf8", "vctrs", "viridisLite", "withr", "zoo" ], "_sysdeps": [ { "shlib": "libjags", "package": "jags", "headers": "jags", "source": "jags", "version": "4.3.2-2.2404.0", "name": "jags", "homepage": "https://mcmc-jags.sourceforge.io", "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler. It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary." }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "example_adjustment_workflow.Rmd", "filename": "example_adjustment_workflow.html", "title": "Example Multivariate Adjustment Workflow", "engine": "knitr::rmarkdown", "headings": [ "Setting up the Workflow", "Generate the Tainted Dataset", "Generate Validity Coefficients", "Pre-Model Fitting", "Attenutation Contamination Matrix", "Multivariate Model", "Comparing Between Unadjusted and Adjusted", "A Quasi-Sensitivity Analysis", "Summary", "Other Resources", "Traceplots and ACFs", "References", "Maintainers" ], "created": "2025-09-23 12:00:41", "modified": "2025-12-13 09:40:50", "commits": 7 }, { "source": "jags-v-stan.Rmd", "filename": "jags-v-stan.html", "title": "JAGS vs. Stan", "engine": "knitr::rmarkdown", "headings": [ "Setting up the Workflow.", "Stan vs. JAGS Error Adjustment", "Traceplots", "References", "Maintainers" ], "created": "2025-09-24 13:55:12", "modified": "2025-12-13 09:40:50", "commits": 4 } ], "_score": 5.113943352306837, "_indexed": true, "_nocasepkg": "racmemeev", "_universes": [ "westford14" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-05-12T08:20:54.000Z", "distro": "noble", "commit": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "fileid": "61ca45870659a2110fc14155e7e06be7706e62737edf6baa19c88a48900f819d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996" }, { "r": "4.6.0", "os": "linux", "version": "1.0.1", "date": "2026-05-12T08:20:58.000Z", "distro": "noble", "commit": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "fileid": "74a4442b44ab7198e1182fd570919068f9df02f4d86a7dbb40e6e60d25be53c0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-05-12T08:21:04.000Z", "commit": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "fileid": "8f07b60ac81a9cb1a15400b922addf206cab09e9c3c0e9158b3756666930ee60", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996" }, { "r": "4.6.0", "os": "mac", "version": "1.0.1", "date": "2026-05-12T08:20:31.000Z", "commit": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "fileid": "de22e6cea6ca3e595f48eacce995e1ec159bb372fa59d97549f862659b451051", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-05-12T08:20:40.000Z", "commit": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "fileid": "5dd5eee8d377910c85336c091d6bcbd7072c9754da765219238ce1cad8b4dfc1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996" }, { "r": "4.5.3", "os": "win", "version": "1.0.1", "date": "2026-05-12T08:19:44.000Z", "commit": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "fileid": "a53253afc829b9ba46182a9731adac48002266d16befccf21bc2d8fc928fd2a1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996" }, { "r": "4.6.0", "os": "win", "version": "1.0.1", "date": "2026-05-12T08:19:58.000Z", "commit": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "fileid": "c0e1898608ed50c026188d697506e5e06b943b3aa755f6f128a0d543a30e73be", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-05-22T10:43:51.000Z", "commit": "e3b1dfeb5893fe8e1a89a4de9fa33a1b4994b46c", "fileid": "3643cc63c58f3a7fa21ff14c1a0168e94d0b2c2cb6567fa8262bfd37f1333cbe", "status": "success", "buildurl": "https://github.com/r-universe/westford14/actions/runs/25722071996" } ] }